From 3db8908ae8fcbff7b5a0e8073aae9c1b2e240d6d Mon Sep 17 00:00:00 2001 From: sathibault Date: Thu, 20 Jun 2013 08:28:58 -0500 Subject: [PATCH] Remove debug print statement --- .../walkers/haplotypecaller/LikelihoodCalculationEngine.java | 1 - 1 file changed, 1 deletion(-) diff --git a/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java b/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java index 2359840dd..60abc6a68 100644 --- a/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java +++ b/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java @@ -250,7 +250,6 @@ public class LikelihoodCalculationEngine { final double[] likelihoods = batchPairHMM.batchGetResult(); for( int jjj = 0; jjj < numHaplotypes; jjj++ ) { final Haplotype haplotype = haplotypes.get(jjj); - System.err.println(Integer.toString(jjj) + ": " + Double.toString(likelihoods[jjj])); if ( haplotype.isNonReference() ) bestNonReflog10L = Math.max(bestNonReflog10L, likelihoods[jjj]); else