From 3db73e0791b4fc4f803002f6a0ec4bf9ab8b5cde Mon Sep 17 00:00:00 2001 From: ebanks Date: Wed, 21 Apr 2010 03:00:43 +0000 Subject: [PATCH] Renaming for consistency git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3221 348d0f76-0448-11de-a6fe-93d51630548a --- .../varianteval/{DbSNPPercentage.java => CompOverlap.java} | 4 ++-- packages/VariantEval.xml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) rename java/src/org/broadinstitute/sting/gatk/walkers/varianteval/{DbSNPPercentage.java => CompOverlap.java} (97%) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/DbSNPPercentage.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/CompOverlap.java similarity index 97% rename from java/src/org/broadinstitute/sting/gatk/walkers/varianteval/DbSNPPercentage.java rename to java/src/org/broadinstitute/sting/gatk/walkers/varianteval/CompOverlap.java index 6edf6168c..b62bc40d8 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/DbSNPPercentage.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/CompOverlap.java @@ -18,7 +18,7 @@ import org.broadinstitute.sting.playground.utils.report.tags.DataPoint; * the Broad Institute nor MIT can be responsible for its use, misuse, or functionality. */ @Analysis(name = "Comp Overlap", description = "the overlap between eval and comp sites") -public class DbSNPPercentage extends VariantEvaluator { +public class CompOverlap extends VariantEvaluator { @DataPoint(name = "eval sites", description = "number of eval SNP sites") long nEvalSNPs = 0; @@ -41,7 +41,7 @@ public class DbSNPPercentage extends VariantEvaluator { @DataPoint(name = "% concordant", description = "the concordance rate") double concordantRate = 0.0; - public DbSNPPercentage(VariantEvalWalker parent) { + public CompOverlap(VariantEvalWalker parent) { // don't do anything } diff --git a/packages/VariantEval.xml b/packages/VariantEval.xml index ad70941f2..c28bbfa36 100644 --- a/packages/VariantEval.xml +++ b/packages/VariantEval.xml @@ -6,7 +6,7 @@ - +