zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Renaming for consistency 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3221 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-04-21 03:00:43 +00:00
parent 3b5673d967
commit 3db73e0791
2 changed files with 3 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
java/src/org/broadinstitute/sting/gatk/walkers/varianteval/DbSNPPercentage.java → java/src/org/broadinstitute/sting/gatk/walkers/varianteval/CompOverlap.java
View File

@ -18,7 +18,7 @@ import org.broadinstitute.sting.playground.utils.report.tags.DataPoint;
* the Broad Institute nor MIT can be responsible for its use, misuse, or functionality.
*/
@Analysis(name = "Comp Overlap", description = "the overlap between eval and comp sites")
public class DbSNPPercentage extends VariantEvaluator {
public class CompOverlap extends VariantEvaluator {
@DataPoint(name = "eval sites", description = "number of eval SNP sites")
long nEvalSNPs = 0;
@ -41,7 +41,7 @@ public class DbSNPPercentage extends VariantEvaluator {
@DataPoint(name = "% concordant", description = "the concordance rate")
double concordantRate = 0.0;
public DbSNPPercentage(VariantEvalWalker parent) {
public CompOverlap(VariantEvalWalker parent) {
// don't do anything
}

2
packages/VariantEval.xml
View File

@ -6,7 +6,7 @@
<dependencies>
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.VariantEvalWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.CountVariants" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.DbSNPPercentage" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.CompOverlap" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.GenotypeConcordance" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.MendelianViolationEvaluator" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.TiTvVariantEvaluator" />