From 3d7575bbb834e1679f744d95463faa6804b5a58e Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 23 Apr 2009 17:35:28 +0000
Subject: [PATCH] Oops...omitted walker.initialize().

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@504 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../org/broadinstitute/sting/gatk/executive/MicroManager.java    | 1 +
 1 file changed, 1 insertion(+)

diff --git a/java/src/org/broadinstitute/sting/gatk/executive/MicroManager.java b/java/src/org/broadinstitute/sting/gatk/executive/MicroManager.java
index 362431efb..133b9c4c3 100644
--- a/java/src/org/broadinstitute/sting/gatk/executive/MicroManager.java
+++ b/java/src/org/broadinstitute/sting/gatk/executive/MicroManager.java
@@ -103,6 +103,7 @@ public class MicroManager {
             throw new RuntimeException( ex );
         }
 
+        walker.initialize();
         Object accumulator = ((LocusWalker<?,?>)walker).reduceInit();
 
         for(Shard shard: shardStrategy) {