diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/AlleleCount.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/AlleleCount.java index ff59c9e29..2cbc66e31 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/AlleleCount.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/AlleleCount.java @@ -43,9 +43,9 @@ public class AlleleCount extends VariantStratifier { if (eval != null) { int AC = -1; - if ( eval.hasAttribute("AC") ) + if ( eval.hasAttribute("AC") && eval.getAttribute("AC") instanceof Integer ) { AC = eval.getAttributeAsInt("AC"); - else if ( eval.isVariant() ) { + } else if ( eval.isVariant() ) { for (Allele allele : eval.getAlternateAlleles()) AC = Math.max(AC, eval.getChromosomeCount(allele)); } else