From 3d2c836db6818f142848a6391d278bcb48d049c6 Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 23 Apr 2010 03:08:58 +0000
Subject: [PATCH] Bug fix for case sensitivity

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3242 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/gatk/walkers/vcftools/VCFCombine.java      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFCombine.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFCombine.java
index 443271dbc..1ab6d79ad 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFCombine.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFCombine.java
@@ -88,7 +88,7 @@ public class VCFCombine extends RodWalker<VCFRecord, VCFWriter> {
             vcfWriter = new VCFWriter(out);
 
         if ( PRIORITY_STRING != null )
-            priority = PRIORITY_STRING.toLowerCase().split(",");
+            priority = PRIORITY_STRING.split(",");
 
         Set<String> samples;
         switch (COMBO_TYPE ) {