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Fixed output stats (percentage denominator) 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4621 348d0f76-0448-11de-a6fe-93d51630548a
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fromer 2010-11-03 18:47:06 +00:00
parent 4e109f58bf
commit 3d27defe93
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/phasing/MergePhasedSegregatingAlternateAllelesVCFWriter.java
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@ -301,7 +301,7 @@ public class MergePhasedSegregatingAlternateAllelesVCFWriter implements VCFWrite
sb.append("ALT-ALT:\t" + alt_alt_pair + "]\n");
int hetAfterHetSites = MNPsites + CHetSites;
sb.append("* Het-Het sites (with REF allele present at each):\t" + percentageString(hetAfterHetSites, numSuccessiveGenotypesWithinDistance) + "\n");
sb.append("* Het-Het sites (with REF allele present at each):\t" + percentageString(hetAfterHetSites, bothInPairHaveVariant) + "\n");
sb.append("* MNPs:\t" + percentageString(MNPsites, hetAfterHetSites) + "\n");
sb.append("Compound Hets:\t" + CHetSites + "\n");