Moved GATK classes and POMs that will need updating.

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GATK classes accessing package protected htsjdk classes will need new package names.
POMs will merge sam/tribble/variant into htsjdk.
Move only, contents updated in next commit.
First of four commits for picard/htsjdk package rename.

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This commit is contained in:

Khalid Shakir 2014-05-07 12:50:28 +08:00

parent 53b2364cf8

commit 3ce3e27aa1

6 changed files with 0 additions and 0 deletions

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public/gatk-framework/src/main/java/net/sf/samtools/GATKBAMFileSpan.java → public/gatk-framework/src/main/java/htsjdk/samtools/GATKBAMFileSpan.java

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public/gatk-framework/src/main/java/net/sf/samtools/GATKBin.java → public/gatk-framework/src/main/java/htsjdk/samtools/GATKBin.java

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public/gatk-framework/src/main/java/net/sf/samtools/GATKChunk.java → public/gatk-framework/src/main/java/htsjdk/samtools/GATKChunk.java

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public/gatk-framework/src/main/java/net/sf/samtools/PicardNamespaceUtils.java → public/gatk-framework/src/main/java/htsjdk/samtools/PicardNamespaceUtils.java

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public/gatk-framework/src/test/java/net/sf/samtools/GATKBAMFileSpanUnitTest.java → public/gatk-framework/src/test/java/htsjdk/samtools/GATKBAMFileSpanUnitTest.java

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public/gatk-framework/src/test/java/net/sf/samtools/GATKChunkUnitTest.java → public/gatk-framework/src/test/java/htsjdk/samtools/GATKChunkUnitTest.java

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