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CalibrateGenotypesLikelihoods include pOfDGivenD now

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Mark DePristo 2012-03-08 09:43:24 -05:00
parent 1011f3862b
commit 3ba2e5667c
1 changed files with 2 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/utils/QualityUtils.java
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@ -10,6 +10,8 @@ import net.sf.samtools.SAMUtils;
*/
public class QualityUtils {
public final static byte MAX_QUAL_SCORE = SAMUtils.MAX_PHRED_SCORE;
public final static double ERROR_RATE_OF_MAX_QUAL_SCORE = qualToErrorProbRaw(MAX_QUAL_SCORE);
public final static double MIN_REASONABLE_ERROR = 0.0001;
public final static byte MAX_REASONABLE_Q_SCORE = 40;
public final static byte MIN_USABLE_Q_SCORE = 6;