From 3b76034d50d17bde3c2edab2a0b3ed3c208c5f0e Mon Sep 17 00:00:00 2001
From: kiran <kiran@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 6 Jan 2011 15:33:26 +0000
Subject: [PATCH] Namespace changes to avoid conflicts with other packages.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4950 348d0f76-0448-11de-a6fe-93d51630548a
---
 R/src/gsalib/R/gsa.read.gatkreport.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/src/gsalib/R/gsa.read.gatkreport.R b/R/src/gsalib/R/gsa.read.gatkreport.R
index 31da57d9a..9b3ef1ad1 100644
--- a/R/src/gsalib/R/gsa.read.gatkreport.R
+++ b/R/src/gsalib/R/gsa.read.gatkreport.R
@@ -37,7 +37,7 @@ gsa.read.gatkreport <- function(filename) {
             headerFields = unlist(strsplit(line, "[[:space:]]+"));
 
             if (!is.na(tableName)) {
-                .assignGATKTableToEnvironment(tableName, tableHeader, tableRows, tableEnv);
+                .gsa.assignGATKTableToEnvironment(tableName, tableHeader, tableRows, tableEnv);
             }
 
             tableName = headerFields[2];