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Cleaned up the isGATKLite check

This commit is contained in:
Eric Banks 2012-07-17 12:46:16 -04:00
parent 62c5228048
commit 3a64398d07
2 changed files with 4 additions and 11 deletions
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4
protected/java/src/org/broadinstitute/sting/utils/DummyProtectedClass.java → protected/java/src/org/broadinstitute/sting/gatk/walkers/DummyProtectedWalker.java
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@ -27,8 +27,8 @@ package org.broadinstitute.sting.utils;
import org.broadinstitute.sting.utils.classloader.ProtectedPackageSource; import org.broadinstitute.sting.utils.classloader.ProtectedPackageSource;
public class DummyProtectedClass implements ProtectedPackageSource { public class DummyProtectedWalker implements ProtectedPackageSource {
// THIS CLASS IS USED JUST SO THAT WE CAN TEST WHETHER WE ARE USING THE LITE OR FULL VERSION OF THE GATK // THIS CLASS IS USED JUST SO THAT WE CAN TEST WHETHER WE ARE USING THE LITE OR FULL VERSION OF THE GATK
// **** DO NOT REMOVE! ****
} }

11
public/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
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@ -207,18 +207,11 @@ public class GenomeAnalysisEngine {
*/ */
public boolean isGATKLite() { public boolean isGATKLite() {
if ( isLiteVersion == null ) { if ( isLiteVersion == null ) {
final List<Class<? extends Object>> classes = new PluginManager<Object>(Object.class).getPlugins(); isLiteVersion = new PluginManager<Object>(Object.class).exists(DummyProtectedWalkerName);
isLiteVersion = true;
for ( Class c : classes ) {
if ( c.getSimpleName().equals(DummyProtectedClassName)) {
isLiteVersion = false;
break;
}
}
} }
return isLiteVersion; return isLiteVersion;
} }
private static final String DummyProtectedClassName = "DummyProtectedClass"; private static final String DummyProtectedWalkerName = "DummyProtectedWalker";
private static Boolean isLiteVersion = null; private static Boolean isLiteVersion = null;
/** /**