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Re-add the 1KG trigger as a comp as well 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4045 348d0f76-0448-11de-a6fe-93d51630548a
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chartl 2010-08-16 18:19:47 +00:00
parent 578e7fa36d
commit 3a4977c75e
1 changed files with 2 additions and 2 deletions
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4
scala/qscript/fullCallingPipeline.q
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@ -111,8 +111,8 @@ def endToEnd(base: String, bamFiles: List[File]) = {
snps.rodBind :+= RodBind( "comp1KG_CEU", "VCF", new File("/humgen/gsa-hpprojects/GATK/data/Comparisons/Unvalidated/1kg_pilot1_projectCalls/CEU.low_coverage.2010_07.sites.hg18.vcf.gz") )
// TODO: what is the 1KG_ALL track?
//snps.rodBind :+= RodBind( "comp1KG_ALL", "VCF", qscript.trigger )
// TODO: what is the 1KG_ALL track? -- same as trigger -- just makes sure the field is propagated :: chartl
snps.rodBind :+= RodBind( "comp1KG_ALL", "VCF", qscript.trigger )
snps.scatterCount = 100