From 3a340ca88760eaa8f7ac192d566a5dc55401e929 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 10 Jun 2009 20:05:54 +0000
Subject: [PATCH] adding the SomaticCoverage.jar to the list of generated jars,
 at least for now.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@977 348d0f76-0448-11de-a6fe-93d51630548a
---
 build.xml | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

diff --git a/build.xml b/build.xml
index 0777932a1..c358f1fe1 100644
--- a/build.xml
+++ b/build.xml
@@ -100,6 +100,18 @@
             <attribute name="Main-Class" value="org.broadinstitute.sting.secondarybase.FourBaseRecaller" />
           </manifest>
         </jar>
+    
+        <jar jarfile="dist/SomaticCoverage.jar" whenmanifestonly="skip">
+          <fileset dir="build">
+            <include name="**/*.class"/>
+            <exclude name="**/utils/**"/>
+            <exclude name="**/gatk/**"/>
+          </fileset>
+          <manifest>
+            <attribute name="Main-Class" value="org.broadinstitute.sting.playground.somaticcoverage.SomaticCoverageTool" />
+          </manifest>
+        </jar>
+
 
         <jar jarfile="dist/AnnotateSecondaryBase.jar" whenmanifestonly="skip">
           <fileset dir="build">
@@ -201,6 +213,12 @@
                 <attribute name="Class-Path" value="${jar.classpath}"/>
             </manifest>
         </jar>
+        
+        <jar jarfile="dist/SomaticCoverage.jar" update="true" whenmanifestonly="skip">
+            <manifest>
+                <attribute name="Class-Path" value="${jar.classpath}"/>
+            </manifest>
+        </jar>
     </target>
 
     <target name="core" description="force a build of the Sting core code">