From 39f45127f305456106cdc61eabc623de731f4e91 Mon Sep 17 00:00:00 2001 From: Guillermo del Angel Date: Sat, 21 Jul 2012 14:41:38 -0400 Subject: [PATCH] Fix md5's broken by recent changes to FisherStrand calculation --- .../walkers/genotyper/UnifiedGenotyperIntegrationTest.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java index 9e960b6ed..f35eb4404 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java @@ -36,7 +36,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { public void testWithAllelesPassedIn1() { WalkerTest.WalkerTestSpec spec1 = new WalkerTest.WalkerTestSpec( baseCommand + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -alleles " + privateTestDir + "allelesForUG.vcf -I " + validationDataLocation + "pilot2_daughters.chr20.10k-11k.bam -o %s -L 20:10,000,000-10,025,000", 1, - Arrays.asList("6f0c49b76225e2099c74015b6f79c96d")); + Arrays.asList("d1e68d4db6585ec00213b1d2d05e01a9")); executeTest("test MultiSample Pilot2 with alleles passed in", spec1); } @@ -44,7 +44,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { public void testWithAllelesPassedIn2() { WalkerTest.WalkerTestSpec spec2 = new WalkerTest.WalkerTestSpec( baseCommand + " --output_mode EMIT_ALL_SITES --genotyping_mode GENOTYPE_GIVEN_ALLELES -alleles " + privateTestDir + "allelesForUG.vcf -I " + validationDataLocation + "pilot2_daughters.chr20.10k-11k.bam -o %s -L 20:10,000,000-10,025,000", 1, - Arrays.asList("055012eca193a1f12421ea79bef1f4e0")); + Arrays.asList("b53860d209f8440f12b78d01606553e1")); executeTest("test MultiSample Pilot2 with alleles passed in and emitting all sites", spec2); } @@ -341,7 +341,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { WalkerTest.WalkerTestSpec spec2 = new WalkerTest.WalkerTestSpec( baseCommandIndels + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -alleles " + result.get(0).getAbsolutePath() + " -I " + validationDataLocation + "low_coverage_CEU.chr1.10k-11k.bam -o %s -L 1:10450700-10551000", 1, - Arrays.asList("c48c8a1a8ec88c6f3c99187e08496ae0")); + Arrays.asList("d0a66c234056bb83dd84113bc2421f1e")); executeTest("test MultiSample Pilot1 CEU indels using GENOTYPE_GIVEN_ALLELES", spec2); }