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Increasing the INFORMATIVE_LIKELIHOOD_THRESHOLD value to 0.2

This commit is contained in:
Ryan Poplin 2012-12-18 15:45:12 -05:00
parent b5d590ba92
commit 3950f7b3e3
1 changed files with 2 additions and 2 deletions
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4
public/java/src/org/broadinstitute/sting/utils/genotyper/PerReadAlleleLikelihoodMap.java
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@ -38,7 +38,7 @@ import java.util.*;
public abstract class PerReadAlleleLikelihoodMap { public abstract class PerReadAlleleLikelihoodMap {
public static final double INFORMATIVE_LIKELIHOOD_THRESHOLD = 0.1; public static final double INFORMATIVE_LIKELIHOOD_THRESHOLD = 0.2;
protected List<Allele> alleles; protected List<Allele> alleles;
protected Map<GATKSAMRecord, Map<Allele, Double>> likelihoodReadMap; protected Map<GATKSAMRecord, Map<Allele, Double>> likelihoodReadMap;
@ -126,7 +126,7 @@ public abstract class PerReadAlleleLikelihoodMap {
public static PerReadAlleleLikelihoodMap getBestAvailablePerReadAlleleLikelihoodMap() { public static PerReadAlleleLikelihoodMap getBestAvailablePerReadAlleleLikelihoodMap() {
final Class PerReadAlleleLikelihoodMapClass = GATKLiteUtils.getProtectedClassIfAvailable(PerReadAlleleLikelihoodMap.class); final Class PerReadAlleleLikelihoodMapClass = GATKLiteUtils.getProtectedClassIfAvailable(PerReadAlleleLikelihoodMap.class);
try { try {
Constructor constructor = PerReadAlleleLikelihoodMapClass.getDeclaredConstructor((Class[])null); final Constructor constructor = PerReadAlleleLikelihoodMapClass.getDeclaredConstructor((Class[])null);
constructor.setAccessible(true); constructor.setAccessible(true);
return (PerReadAlleleLikelihoodMap)constructor.newInstance(); return (PerReadAlleleLikelihoodMap)constructor.newInstance();
} }