diff --git a/public/java/src/org/broadinstitute/sting/utils/genotyper/PerReadAlleleLikelihoodMap.java b/public/java/src/org/broadinstitute/sting/utils/genotyper/PerReadAlleleLikelihoodMap.java index 9bb0e646f..d79b7c142 100644 --- a/public/java/src/org/broadinstitute/sting/utils/genotyper/PerReadAlleleLikelihoodMap.java +++ b/public/java/src/org/broadinstitute/sting/utils/genotyper/PerReadAlleleLikelihoodMap.java @@ -38,7 +38,7 @@ import java.util.*; public abstract class PerReadAlleleLikelihoodMap { - public static final double INFORMATIVE_LIKELIHOOD_THRESHOLD = 0.1; + public static final double INFORMATIVE_LIKELIHOOD_THRESHOLD = 0.2; protected List alleles; protected Map> likelihoodReadMap; @@ -126,7 +126,7 @@ public abstract class PerReadAlleleLikelihoodMap { public static PerReadAlleleLikelihoodMap getBestAvailablePerReadAlleleLikelihoodMap() { final Class PerReadAlleleLikelihoodMapClass = GATKLiteUtils.getProtectedClassIfAvailable(PerReadAlleleLikelihoodMap.class); try { - Constructor constructor = PerReadAlleleLikelihoodMapClass.getDeclaredConstructor((Class[])null); + final Constructor constructor = PerReadAlleleLikelihoodMapClass.getDeclaredConstructor((Class[])null); constructor.setAccessible(true); return (PerReadAlleleLikelihoodMap)constructor.newInstance(); }