From 3949b4ac722bbbf14969946f6e5bae25db1f34aa Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sat, 12 Sep 2009 19:09:21 +0000
Subject: [PATCH] commented out version of next() and hasNext() that appear to
 be correct but are causing testing problems

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1596 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/refdata/RODIterator.java       | 22 ++++++++++++++++++-
 1 file changed, 21 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/RODIterator.java b/java/src/org/broadinstitute/sting/gatk/refdata/RODIterator.java
index 73c7b78a9..f689076af 100755
--- a/java/src/org/broadinstitute/sting/gatk/refdata/RODIterator.java
+++ b/java/src/org/broadinstitute/sting/gatk/refdata/RODIterator.java
@@ -30,7 +30,7 @@ public class RODIterator<ROD extends ReferenceOrderedDatum> implements Iterator<
 
     @Override
     public boolean hasNext() { return it.hasNext(); }
-    
+
     @Override
     public ROD next() {
         ROD next = it.next();
@@ -41,6 +41,26 @@ public class RODIterator<ROD extends ReferenceOrderedDatum> implements Iterator<
         return next;
     }
 
+//    @Override
+//    public boolean hasNext() { return current != null || it.hasNext(); }
+//
+//    @Override
+//    public ROD next() {
+//        if ( current != null ) {
+//            ROD prev = current;
+//            current = null;
+//            return prev;
+//        } else {
+//            ROD next = it.next();
+//            if( next != null ) {
+//                position = next.getLocation().clone();
+//                //current = next;
+//            }
+//
+//            return next;
+//        }
+//    }
+
     /**
      * Returns the current position of this iterator.
      * @return Current position of the iterator, or null if no position exists.