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minor update to comment in UG

This commit is contained in:
Ryan Poplin 2011-08-02 13:30:38 -04:00
parent e7b4959ebe
commit 38e4ae4176
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
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@ -428,7 +428,7 @@ public class UnifiedGenotyperEngine {
myAlleles, genotypes, phredScaledConfidence/10.0, passesCallThreshold(phredScaledConfidence) ? null : filter, attributes); myAlleles, genotypes, phredScaledConfidence/10.0, passesCallThreshold(phredScaledConfidence) ? null : filter, attributes);
if ( annotationEngine != null ) { if ( annotationEngine != null ) {
// first off, we want to use the *unfiltered* and *unBAQed* context for the annotations // Note: we want to use the *unfiltered* and *unBAQed* context for the annotations
ReadBackedPileup pileup = null; ReadBackedPileup pileup = null;
if (rawContext.hasExtendedEventPileup()) if (rawContext.hasExtendedEventPileup())
pileup = rawContext.getExtendedEventPileup(); pileup = rawContext.getExtendedEventPileup();