From 38e4ae4176a9a8ce5b6c359b01ca63c08b21c236 Mon Sep 17 00:00:00 2001
From: Ryan Poplin <rpoplin@broadinstitute.org>
Date: Tue, 2 Aug 2011 13:30:38 -0400
Subject: [PATCH] minor update to comment in UG

---
 .../sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
index a10897172..61892a8c0 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
@@ -428,7 +428,7 @@ public class UnifiedGenotyperEngine {
                 myAlleles, genotypes, phredScaledConfidence/10.0, passesCallThreshold(phredScaledConfidence) ? null : filter, attributes);
 
         if ( annotationEngine != null ) {
-            // first off, we want to use the *unfiltered* and *unBAQed* context for the annotations
+            // Note: we want to use the *unfiltered* and *unBAQed* context for the annotations
             ReadBackedPileup pileup = null;
             if (rawContext.hasExtendedEventPileup())
                 pileup = rawContext.getExtendedEventPileup();