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Renamed ReferenceContext's getSimpleBase() method to getBaseIndex() 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2334 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2009-12-11 20:14:39 +00:00
parent 09811b9f34
commit 38d9f7b903
1 changed files with 1 additions and 1 deletions
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java/src/org/broadinstitute/sting/gatk/contexts/ReferenceContext.java
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@ -95,7 +95,7 @@ public class ReferenceContext {
* Get the base at the given locus. * Get the base at the given locus.
* @return The base at the given locus from the reference. * @return The base at the given locus from the reference.
*/ */
public int getSimpleBase() { public int getBaseIndex() {
return BaseUtils.simpleBaseToBaseIndex(getBase()); return BaseUtils.simpleBaseToBaseIndex(getBase());
} }