Renamed ReferenceContext's getSimpleBase() method to getBaseIndex()

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2334 348d0f76-0448-11de-a6fe-93d51630548a
2009-12-11 20:14:39 +00:00 · 2009-12-11 20:14:39 +00:00 · 38d9f7b903
parent 09811b9f34
commit 38d9f7b903
1 changed files with 1 additions and 1 deletions
--- a/java/src/org/broadinstitute/sting/gatk/contexts/ReferenceContext.java
+++ b/java/src/org/broadinstitute/sting/gatk/contexts/ReferenceContext.java
@ -95,7 +95,7 @@ public class ReferenceContext {
     * Get the base at the given locus.
     * @return The base at the given locus from the reference.
     */
-    public int getSimpleBase() {
+    public int getBaseIndex() {
        return BaseUtils.simpleBaseToBaseIndex(getBase());
    }