From 3879b02cdd24438f8c55ccc32cefb816cf9fd717 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 24 Jun 2011 20:13:28 +0000
Subject: [PATCH] updating a package

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6079 348d0f76-0448-11de-a6fe-93d51630548a
---
 scala/qscript/playground/HybridSelectionPipeline.scala | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scala/qscript/playground/HybridSelectionPipeline.scala b/scala/qscript/playground/HybridSelectionPipeline.scala
index 3ddf0d9df..533c2f8d3 100644
--- a/scala/qscript/playground/HybridSelectionPipeline.scala
+++ b/scala/qscript/playground/HybridSelectionPipeline.scala
@@ -137,7 +137,7 @@ class HybridSelectionPipeline extends QScript {
     combineSNPsIndels.rodBind :+= RodBind("indels", "VCF", filterIndels.out)
     combineSNPsIndels.rodBind :+= RodBind("snps", "VCF", filterSNPs.out)
     combineSNPsIndels.rod_priority_list = "indels,snps"
-    combineSNPsIndels.filteredrecordsmergetype = org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContextUtils.FilteredRecordMergeType.KEEP_IF_ANY_UNFILTERED
+    combineSNPsIndels.filteredrecordsmergetype = org.broadinstitute.sting.utils.variantcontext.VariantContextUtils.FilteredRecordMergeType.KEEP_IF_ANY_UNFILTERED
     combineSNPsIndels.assumeIdenticalSamples = true
     combineSNPsIndels.out = projectBase + ".unannotated.vcf"
     combineSNPsIndels.jobOutputFile = combineSNPsIndels.out + ".out"