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updating a package 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6079 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2011-06-24 20:13:28 +00:00
parent 86aa82caf8
commit 3879b02cdd
1 changed files with 1 additions and 1 deletions
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2
scala/qscript/playground/HybridSelectionPipeline.scala
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@ -137,7 +137,7 @@ class HybridSelectionPipeline extends QScript {
combineSNPsIndels.rodBind :+= RodBind("indels", "VCF", filterIndels.out)
combineSNPsIndels.rodBind :+= RodBind("snps", "VCF", filterSNPs.out)
combineSNPsIndels.rod_priority_list = "indels,snps"
combineSNPsIndels.filteredrecordsmergetype = org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContextUtils.FilteredRecordMergeType.KEEP_IF_ANY_UNFILTERED
combineSNPsIndels.filteredrecordsmergetype = org.broadinstitute.sting.utils.variantcontext.VariantContextUtils.FilteredRecordMergeType.KEEP_IF_ANY_UNFILTERED
combineSNPsIndels.assumeIdenticalSamples = true
combineSNPsIndels.out = projectBase + ".unannotated.vcf"
combineSNPsIndels.jobOutputFile = combineSNPsIndels.out + ".out"