diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/GenotypeLikelihoodsTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/GenotypeLikelihoodsTest.java index bb18fefb7..4131e5831 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/GenotypeLikelihoodsTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/GenotypeLikelihoodsTest.java @@ -17,18 +17,7 @@ public class GenotypeLikelihoodsTest extends BaseTest { @Test public void testBasic() { logger.warn("Executing testIsBetween"); - Assert.assertTrue(GenotypeLikelihoods.oneMinusData.length >= Byte.MAX_VALUE); - Assert.assertTrue(GenotypeLikelihoods.oneHalfMinusDataArachne.length >= Byte.MAX_VALUE); - Assert.assertTrue(GenotypeLikelihoods.oneHalfMinusData3Base.length >= Byte.MAX_VALUE); - Assert.assertEquals(GenotypeLikelihoods.log10Of1_3,-0.4771212547196624, DELTA); Assert.assertEquals(DiploidGenotypePriors.HUMAN_HETEROZYGOSITY,1e-3, DELTA); - - for (int qual = 0; qual < Byte.MAX_VALUE; qual++) { - double e = pow(10, (qual / -10.0)); - Assert.assertEquals(GenotypeLikelihoods.oneMinusData[qual], log10(1.0 - e), DELTA); - Assert.assertEquals(GenotypeLikelihoods.oneHalfMinusDataArachne[qual], log10(0.5 - e / 2.0), DELTA); - Assert.assertEquals(GenotypeLikelihoods.oneHalfMinusData3Base[qual], log10(0.5 - e / 2.0 + e / 6.0), DELTA); - } }