One md5sum slipped past in the HC integration test.
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@ -33,7 +33,7 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest {
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@Test
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public void testHaplotypeCallerMultiSampleGGA() {
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HCTest(CEUTRIO_BAM, "--max_alternate_alleles 3 -gt_mode GENOTYPE_GIVEN_ALLELES -out_mode EMIT_ALL_SITES -alleles " + validationDataLocation + "combined.phase1.chr20.raw.indels.sites.vcf",
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"a2d56179cd19a41f8bfb995e225320bb");
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"44df2a9da4fbd2162ae44c3f2a6ef01f");
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}
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private void HCTestComplexVariants(String bam, String args, String md5) {
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