From 36d8f552863df21cab443be2c7dae8016c218b48 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 12 Apr 2011 23:11:45 +0000
Subject: [PATCH] Use the 'standard' arcsine transform

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5619 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/association/AssociationTestRunner.java            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java
index dbc2ba339..f583429b8 100755
--- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java
@@ -31,10 +31,10 @@ public class AssociationTestRunner {
         }
     };
 
-    final static Dichotomizer1D.Transform ARCSINE_TRANSFORM = (new Dichotomizer1D()).new Transform() {
+    final static Dichotomizer1D.Transform STD_ASIN = (new Dichotomizer1D()).new Transform() {
         @Override
         public double transform(double d) {
-            return Math.asin(1.0-d);
+            return Math.asin(Math.sqrt(d));
         }
     };