diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java index dbc2ba339..f583429b8 100755 --- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java +++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/association/AssociationTestRunner.java @@ -31,10 +31,10 @@ public class AssociationTestRunner { } }; - final static Dichotomizer1D.Transform ARCSINE_TRANSFORM = (new Dichotomizer1D()).new Transform() { + final static Dichotomizer1D.Transform STD_ASIN = (new Dichotomizer1D()).new Transform() { @Override public double transform(double d) { - return Math.asin(1.0-d); + return Math.asin(Math.sqrt(d)); } };