diff --git a/R/analyzeConcordance/analyzeConcordance.R b/R/analyzeConcordance/analyzeConcordance.R index 584e0783c..2cba55d0f 100755 --- a/R/analyzeConcordance/analyzeConcordance.R +++ b/R/analyzeConcordance/analyzeConcordance.R @@ -29,7 +29,7 @@ if (nrow(d.filtered) > 0) { nFilterTypes <- 1 } -png(outfile, width=600, height=(300 * nFilterTypes)) +bitmap(outfile, width=600, height=(300 * nFilterTypes), units="px") par(cex=1.1, mfrow=c(1 * nFilterTypes,2)) nbreaks <- 20 color <- "grey" @@ -51,7 +51,7 @@ dev.off() outfile = paste(base_name, ".novel_vs_known_titv.png", sep="") -png(outfile, width=600, height=600) +bitmap(outfile, width=600, height=600, units="px") d.display <- d.display[order(d.display$novel_titv),] plot(1:length(d.display$known_titv),d.display$known_titv,type="b",col="blue",ylim=c(0,4), xlab="Sample #", ylab="Ti / Tv")