Don't compute SB for ref calls

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4735 348d0f76-0448-11de-a6fe-93d51630548a
2010-11-26 03:54:26 +00:00 · 2010-11-26 03:54:26 +00:00 · 35b90d2295
parent 6934f83cc7
commit 35b90d2295
1 changed files with 1 additions and 1 deletions
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
@ -228,7 +228,7 @@ public class UnifiedGenotyperEngine {
            attributes.put(VCFConstants.DOWNSAMPLED_KEY, true);


-        if ( !UAC.NO_SLOD ) {
+        if ( !UAC.NO_SLOD && bestAFguess != 0 ) {
            final boolean DEBUG_SLOD = false;

            // the overall lod