From 359fe150c9e40de631aeab53f13ccb8d6d76987c Mon Sep 17 00:00:00 2001 From: Phillip Dexheimer Date: Mon, 4 Aug 2014 23:19:16 -0400 Subject: [PATCH] Documentation fix (closed HTML tag) --- .../gatk/tools/walkers/variantutils/GenotypeConcordance.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/tools/walkers/variantutils/GenotypeConcordance.java b/public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/tools/walkers/variantutils/GenotypeConcordance.java index 9ddcc34e7..d2f251a42 100644 --- a/public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/tools/walkers/variantutils/GenotypeConcordance.java +++ b/public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/tools/walkers/variantutils/GenotypeConcordance.java @@ -106,7 +106,7 @@ import java.util.*; *
  • UNAVAILABLE: variant is not called in this callset
  • *
  • MIXED: something like ./1
  • * - *
  • GenotypeConcordance_Summary
  • + *
  • GenotypeConcordance_Summary
  • *
      *
    • Non-Reference_Sensitivity (NRS): sensitivity of the EVAL calls to polymorphic calls in the COMP set, calculated by (# true positive)/(# true polymorphic)
    • *
    • Non-Reference_Discrepancy (NRD): genotype discordance excluding concordant reference sites, calculated by (# discordant sites)/(total excluding # HOM_REF_HOM_REF) = 1.0-(# HOM_VAR_HOM_VAR + # HET_HET)/(total excluding # HOM_REF_HOM_REF)