diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala index 68bfe6318..804e50421 100755 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala @@ -81,7 +81,7 @@ class GATKResourcesBundle extends QScript { def initializeTestDataFiles() = { // - // Standard evaluation files for indels + // Standard evaluation files for indel // b37 = new Reference("b37", new File("/Users/depristo/Desktop/broadLocal/localData/human_g1k_v37.fasta")) hg18 = new Reference("hg18", new File("/Users/depristo/Desktop/broadLocal/localData/Homo_sapiens_assembly18.fasta")) @@ -122,8 +122,8 @@ class GATKResourcesBundle extends QScript { // // standard VCF files. Will be lifted to each reference // - addResource(new Resource("/humgen/gsa-hpprojects/GATK/data/Comparisons/Validated/dbSNP/dbsnp_132_b37.leftAligned.vcf", - "dbsnp_132", b37, true, false)) + addResource(new Resource("/humgen/gsa-hpprojects/GATK/data/Comparisons/Validated/dbSNP/dbsnp_135_b37.leftAligned.vcf", + "dbsnp_135", b37, true, false)) addResource(new Resource("/humgen/gsa-hpprojects/GATK/data/Comparisons/Validated/Omni2.5_chip/Omni25_genotypes_1525_samples.b37.vcf", "1000G_omni2.5", b37, true, true)) @@ -132,7 +132,7 @@ class GATKResourcesBundle extends QScript { "hapmap_3.3", b37, true, true)) addResource(new Resource("/humgen/1kg/DCC/ftp/technical/working/20120312_phase1_v2_indel_cleaned_sites_list/ALL.wgs.phase1_release_v2.20101123.official_indel_calls.20120312.sites.vcf", - "1000G_phase2.indels", b37, true, false)) + "1000G_phase1.indels", b37, true, false)) addResource(new Resource("/humgen/gsa-hpprojects/GATK/data/Comparisons/Unvalidated/GoldStandardIndel/gold.standard.indel.MillsAnd1000G.b37.vcf", "Mills_and_1000G_gold_standard.indels", b37, true, true))