From 355396109b8874100878f082bfa24d5e8cb7f194 Mon Sep 17 00:00:00 2001
From: delangel <delangel@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 21 May 2010 18:48:56 +0000
Subject: [PATCH] Bug fix to avoid build failure (class changed under me??)

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3416 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/AnnotationByAlleleFrequencyWalker.java            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AnnotationByAlleleFrequencyWalker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AnnotationByAlleleFrequencyWalker.java
index 4f1f4ba58..9c49f44f3 100755
--- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AnnotationByAlleleFrequencyWalker.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AnnotationByAlleleFrequencyWalker.java
@@ -153,8 +153,8 @@ public class AnnotationByAlleleFrequencyWalker  extends RodWalker<Integer, Integ
 
 
             try {
-                vc_eval = tracker.getVariantContext("eval", vc, loc, true);
-                vc_ref = tracker.getVariantContext("HapMap", vc, loc, true);
+                vc_eval = tracker.getVariantContext(ref,"eval", vc, loc, true);
+                vc_ref = tracker.getVariantContext(ref,"HapMap", vc, loc, true);
             } catch (java.util.NoSuchElementException e) {
                 return 0;
             }