From 354529bff37626c5f46de89a60987d3d3fd40aec Mon Sep 17 00:00:00 2001 From: Ryan Poplin Date: Fri, 9 Sep 2011 13:15:24 -0400 Subject: [PATCH] adding Validate Variants integration test with a deletion --- .../ValidateVariantsIntegrationTest.java | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/ValidateVariantsIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/ValidateVariantsIntegrationTest.java index adf3b21a8..3d41be1ae 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/ValidateVariantsIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/ValidateVariantsIntegrationTest.java @@ -113,4 +113,16 @@ public class ValidateVariantsIntegrationTest extends WalkerTest { executeTest("test bad alt allele", spec); } + + @Test + public void testBadAllele2() { + WalkerTestSpec spec = new WalkerTestSpec( + baseTestString("validationExampleBad3.vcf", "ALLELES"), + 0, + UserException.MalformedFile.class + ); + + executeTest("test bad alt allele", spec); + } + }