diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java index 41096aa5d..e71cd4d0f 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java @@ -604,7 +604,7 @@ public class IndelGenotyperV2Walker extends ReadWalker { else b.append(annUnknown); // we have no idea what this is. this may actually happen when we have a fully non-coding exon... } b.append('\t'); - b.append(((Transcript)ann.get(0)).getGeneName()); // there is at least one transcript in the list, guaranteed + b.append(((Transcript)ann.get(0).getUnderlyingObject()).getGeneName()); // there is at least one transcript in the list, guaranteed // while ( it.hasNext() ) { // // t.getGeneName() // }