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Explicit type cast fixed in order to work with new ROD implementation 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3124 348d0f76-0448-11de-a6fe-93d51630548a
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asivache 2010-04-06 15:02:56 +00:00
parent 2d002c56c3
commit 3530ef5a41
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java
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@ -604,7 +604,7 @@ public class IndelGenotyperV2Walker extends ReadWalker<Integer,Integer> {
else b.append(annUnknown); // we have no idea what this is. this may actually happen when we have a fully non-coding exon...
}
b.append('\t');
b.append(((Transcript)ann.get(0)).getGeneName()); // there is at least one transcript in the list, guaranteed
b.append(((Transcript)ann.get(0).getUnderlyingObject()).getGeneName()); // there is at least one transcript in the list, guaranteed
// while ( it.hasNext() ) { //
// t.getGeneName()
// }