From 3519323156e59abe5346bd96c7de92138c70ac31 Mon Sep 17 00:00:00 2001 From: ebanks Date: Thu, 9 Jul 2009 19:45:18 +0000 Subject: [PATCH] Output the correct geli text format git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1208 348d0f76-0448-11de-a6fe-93d51630548a --- .../org/broadinstitute/sting/gatk/refdata/rodVariants.java | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java b/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java index 771fe5117..decc9a4b2 100755 --- a/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java @@ -67,8 +67,9 @@ public class rodVariants extends BasicReferenceOrderedDatum { } public String toString() { - return String.format("%s %c %d %d %s %4.4f %4.4f %f %f %f %f %f %f %f %f %f %f", - loc, + return String.format("%s\t%d\t%c\t%d\t%d\t%s\t%4.4f\t%4.4f\t%f\t%f\t%f\t%f\t%f\t%f\t%f\t%f\t%f\t%f", + loc.getContig(), + loc.getStart(), refBase, depth, maxMappingQuality,