diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java b/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java index 771fe5117..decc9a4b2 100755 --- a/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/rodVariants.java @@ -67,8 +67,9 @@ public class rodVariants extends BasicReferenceOrderedDatum { } public String toString() { - return String.format("%s %c %d %d %s %4.4f %4.4f %f %f %f %f %f %f %f %f %f %f", - loc, + return String.format("%s\t%d\t%c\t%d\t%d\t%s\t%4.4f\t%4.4f\t%f\t%f\t%f\t%f\t%f\t%f\t%f\t%f\t%f\t%f", + loc.getContig(), + loc.getStart(), refBase, depth, maxMappingQuality,