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Better --sample selection integration test for VE. The previous one would return true even if --sample was not working at all.

This commit is contained in:
Eric Banks 2011-11-06 01:07:49 -04:00
parent 1c4e429a1c
commit 3517489a22
1 changed files with 3 additions and 3 deletions
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6
public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
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@ -9,7 +9,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
private static String variantEvalTestDataRoot = validationDataLocation + "VariantEval";
private static String fundamentalTestVCF = variantEvalTestDataRoot + "/" + "FundamentalsTest.annotated.db.subset.snps_and_indels.vcf";
private static String fundamentalTestSNPsVCF = variantEvalTestDataRoot + "/" + "FundamentalsTest.annotated.db.subset.final.vcf";
private static String fundamentalTestSNPsOneSampleVCF = variantEvalTestDataRoot + "/" + "FundamentalsTest.annotated.db.subset.final.HG00625.vcf";
private static String fundamentalTestSNPsOneSampleVCF = variantEvalTestDataRoot + "/" + "FundamentalsTest.annotated.db.subset.final.NA12045.vcf";
private static String cmdRoot = "-T VariantEval" +
" -R " + b36KGReference;
@ -359,7 +359,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
@Test
public void testPerSampleAndSubsettedSampleHaveSameResults() {
String md5 = "b0565ac61b2860248e4abd478a177b5e";
String md5 = "7425ca5c439afd7bb33ed5cfea02c2b3";
WalkerTestSpec spec = new WalkerTestSpec(
buildCommandLine(
@ -369,7 +369,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
"--eval " + fundamentalTestSNPsVCF,
"-noEV",
"-EV CompOverlap",
"-sn HG00625",
"-sn NA12045",
"-noST",
"-L " + fundamentalTestSNPsVCF,
"-o %s"