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gatk-3.8
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As with the cleaner, don't exception out when trying to get the GATK version after -Ddisable.help=true 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5155 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2011-02-01 06:08:59 +00:00
parent 4243f0dea7
commit 34f5587f2c
1 changed files with 4 additions and 1 deletions
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5
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java
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@ -259,7 +259,10 @@ public class TableRecalibrationWalker extends ReadWalker<SAMRecord, SAMFileWrite
if( !NO_PG_TAG ) {
final SAMProgramRecord programRecord = new SAMProgramRecord(PROGRAM_RECORD_NAME);
final ResourceBundle headerInfo = TextFormattingUtils.loadResourceBundle("StingText");
programRecord.setProgramVersion( headerInfo.getString("org.broadinstitute.sting.gatk.version") );
try {
final String version = headerInfo.getString("org.broadinstitute.sting.gatk.version");
programRecord.setProgramVersion(version);
} catch (MissingResourceException e) {}
StringBuffer sb = new StringBuffer();
sb.append(getToolkit().createApproximateCommandLineArgumentString(getToolkit(), this));