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Adding dbsnp to all UG performance tests 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3347 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-05-11 15:48:05 +00:00
parent 140e43b93b
commit 34969f304c
1 changed files with 4 additions and 1 deletions
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5
java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java
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@ -14,6 +14,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -T UnifiedGenotyper" +
" -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" +
" -L chr1:1-50,000,000" +
" -D " + GATKDataLocation + "dbsnp_129_hg18.rod" +
" -varout /dev/null",
0,
new ArrayList<String>(0));
@ -27,6 +28,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -T UnifiedGenotyper" +
" -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" +
" -L " + evaluationDataLocation + "whole_exome_agilent_designed_120.targets.chr1.interval_list" +
" -D " + GATKDataLocation + "dbsnp_129_hg18.rod" +
" -varout /dev/null",
0,
new ArrayList<String>(0));
@ -41,10 +43,11 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" +
" -L chr1:1-50,000,000" +
" -nt 10" +
" -D " + GATKDataLocation + "dbsnp_129_hg18.rod" +
" -varout /dev/null",
0,
new ArrayList<String>(0));
executeTest("testUnifiedGenotyperWGParallel", spec);
}
}
}