zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Fix for HMM optimization. If the two penalty arrays match exactly the function should return the end of the array instead of 0.

This commit is contained in:
Ryan Poplin 2011-11-09 22:00:52 -05:00
parent d828eba7f4
commit 348f2db7fd
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
public/java/src/org/broadinstitute/sting/gatk/walkers/indels/PairHMMIndelErrorModel.java
View File

@ -622,7 +622,7 @@ public class PairHMMIndelErrorModel {
if ( b1[i]!= b2[i])
return i;
}
return 0; // sanity check
return b1.length;
}
private int computeFirstDifferingPosition(double[] b1, double[] b2) {
@ -633,7 +633,7 @@ public class PairHMMIndelErrorModel {
if ( b1[i]!= b2[i])
return i;
}
return 0; // sanity check
return b1.length;
}
private final static double[] getHaplotypeLikelihoods(final int numHaplotypes, final int readCounts[], final double readLikelihoods[][]) {