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Moving doclets to public

This commit is contained in:
Mauricio Carneiro 2012-07-23 23:50:24 -04:00
parent 0cca75a290
commit 348e86159e
2 changed files with 256 additions and 0 deletions
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173
public/java/src/org/broadinstitute/sting/utils/help/ForumAPIUtils.java 100644
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/*
* Copyright (c) 2012, The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.utils.help;
import com.google.gson.Gson;
import org.apache.commons.io.IOUtils;
import org.apache.http.HttpResponse;
import org.apache.http.client.ClientProtocolException;
import org.apache.http.client.methods.HttpGet;
import org.apache.http.client.methods.HttpPost;
import org.apache.http.entity.StringEntity;
import org.apache.http.impl.client.DefaultHttpClient;
import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.net.MalformedURLException;
import java.util.ArrayList;
import java.util.List;
public class ForumAPIUtils {
/**
* How we post to the forum
*/
private final static String API_URL = "https://gatk.vanillaforums.com/";
final private static String ACCESS_TOKEN = "access_token=";
public static List<String> getPostedTools(String forumKey) {
Gson gson = new Gson();
List<String> output = new ArrayList<String>();
String text = httpGet(API_URL + "categories.json?CategoryIdentifier=tool-bulletin&page=1-100000&" + ACCESS_TOKEN + forumKey);
APIQuery details = gson.fromJson(text, APIQuery.class);
ForumDiscussion[] discussions = details.Discussions;
for (ForumDiscussion post : discussions) {
output.add(post.Name);
}
/*
System.out.println(details.isJsonArray());
System.out.println(details.isJsonNull());
System.out.println(details.isJsonObject());
System.out.println(details.isJsonPrimitive());
JsonArray posted = details.getAsJsonPrimitive().get("Discussions").getAsJsonArray();
for ( JsonElement post : posted ) {
output.add( post.getAsJsonObject().get("Name").getAsString());
}
*/
return output;
}
private static String httpGet(String urlStr) {
String output = "";
try {
DefaultHttpClient httpClient = new DefaultHttpClient();
HttpGet getRequest = new HttpGet(urlStr);
getRequest.addHeader("accept", "application/json");
HttpResponse response = httpClient.execute(getRequest);
if (response.getStatusLine().getStatusCode() != 200) {
throw new RuntimeException("Failed : HTTP error code : "
+ response.getStatusLine().getStatusCode());
}
output = IOUtils.toString(response.getEntity().getContent());
httpClient.getConnectionManager().shutdown();
} catch (ClientProtocolException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
return output;
}
private static String httpPost(String data, String URL) {
try {
DefaultHttpClient httpClient = new DefaultHttpClient();
HttpPost postRequest = new HttpPost(URL);
StringEntity input = new StringEntity(data);
input.setContentType("application/json");
postRequest.setEntity(input);
HttpResponse response = httpClient.execute(postRequest);
if (response.getStatusLine().getStatusCode() != 200) {
throw new RuntimeException("Failed : HTTP error code : "
+ response.getStatusLine().getStatusCode());
}
BufferedReader br = new BufferedReader(
new InputStreamReader((response.getEntity().getContent())));
String output = "";
String line;
System.out.println("Output from Server .... \n");
while ((line = br.readLine()) != null) {
output += (line + '\n');
System.out.println(line);
}
httpClient.getConnectionManager().shutdown();
return output;
} catch (MalformedURLException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
return null;
}
public static void postToForum(GATKDocWorkUnit tool, final String forumKey) {
ForumDiscussion post = new ForumDiscussion(tool);
Gson gson = new Gson();
String data = gson.toJson(post.getPostData());
httpPost(data, API_URL + "post/discussion.json?" + ACCESS_TOKEN + forumKey);
}
class APIQuery {
ForumDiscussion[] Discussions;
public APIQuery() {
}
}
}

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public/java/src/org/broadinstitute/sting/utils/help/ForumDiscussion.java 100644
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/*
* Copyright (c) 2012, The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.utils.help;
import java.util.HashMap;
import java.util.Map;
class ForumDiscussion {
final private static String POST_TEMPLATE = "<p>A new tool has been released!</p><p>Check out the documentation at <a href='%s'>%s</a>.</p>";
final int Announce;
final String Body;
final String Category;
final int Closed;
final String Format;
final String Name;
final int Sink;
final String Tags;
final String Type;
public ForumDiscussion(String name, String body, String format, String category,
String tagsCSV, String type, int closed, int announce, int sink) {
this.Name = name;
this.Body = body;
this.Format = format;
this.Category = category;
this.Tags = tagsCSV;
this.Type = type;
this.Closed = closed;
this.Announce = announce;
this.Sink = sink;
}
public ForumDiscussion(GATKDocWorkUnit tool) {
this(tool.name,
String.format(POST_TEMPLATE, GATKDocUtils.URL_ROOT_FOR_RELEASE_GATKDOCS + tool.filename, tool.name),
"Html", "tool-bulletin", tool.name + "," + tool.group + ",gatkdocs", "Discussion", 0, -1, -1);
}
public Map<String, String> getPostData() {
Map<String, String> output = new HashMap<String, String>();
output.put("Name", Name);
output.put("Body", Body);
output.put("Format", Format);
output.put("Category", Category);
if (Tags != null)
output.put("Tags", Tags);
if (Type != null)
output.put("Type", Type);
if (Closed != -1)
output.put("Closed", Closed == 1 ? "1" : "0");
if (Announce != -1)
output.put("Announce", Announce == 1 ? "1" : "0");
if (Sink != -1)
output.put("Sink", Sink == 1 ? "1" : "0");
return output;
}
}