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Updating UG integration tests for arbitrary impact of sample order changes on downsampling

This commit is contained in:
Mark DePristo 2011-10-04 08:14:00 -07:00
parent fee89e47ff
commit 343a7b6b2f
1 changed files with 2 additions and 2 deletions
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4
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
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@ -29,7 +29,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
public void testMultiSamplePilot1() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
baseCommand + " -I " + validationDataLocation + "low_coverage_CEU.chr1.10k-11k.bam -o %s -L 1:10,022,000-10,025,000", 1,
Arrays.asList("e6639ea2dc81635c706e6c35921406d7"));
Arrays.asList("b27939251539439a382538e507e03507"));
executeTest("test MultiSample Pilot1", spec);
}
@ -280,7 +280,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
WalkerTest.WalkerTestSpec spec4 = new WalkerTest.WalkerTestSpec(
baseCommandIndelsb37 + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -alleles " + validationDataLocation + "ALL.wgs.union_v2_chr20_100_110K.20101123.indels.sites.vcf -I " + validationDataLocation +
"phase1_GBR_realigned.chr20.100K-110K.bam -o %s -L 20:100,000-110,000", 1,
Arrays.asList("4be308fd9e8167ebee677f62a7a753b7"));
Arrays.asList("37e891bf1ac40caec9ea228f39c27e44"));
executeTest("test MultiSample 1000G Phase1 indels with complicated records emitting all sites", spec4);
}