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Use a publicly accessible sequence file

This commit is contained in:
Ron Levine 2014-11-24 11:18:21 -05:00
parent 6ff698c556
commit 34241a62f6
1 changed files with 1 additions and 1 deletions
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protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilitiesUnitTest.java
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@ -75,7 +75,7 @@ public class PhasingUtilitiesUnitTest extends BaseTest {
@BeforeClass @BeforeClass
public void init() throws FileNotFoundException { public void init() throws FileNotFoundException {
referenceFile = new CachingIndexedFastaSequenceFile(new File("/Users/ronlevine/exampleFASTA/exampleFASTA.fasta")); referenceFile = new CachingIndexedFastaSequenceFile(new File(b37KGReference));
ref = Allele.create("C", true); ref = Allele.create("C", true);
alt = Allele.create("T", true); alt = Allele.create("T", true);
} }