From 34241a62f6d016aa1925f158a8669ad417f55097 Mon Sep 17 00:00:00 2001
From: Ron Levine <rlevine@roadinstitute.org>
Date: Mon, 24 Nov 2014 11:18:21 -0500
Subject: [PATCH] Use a publicly accessible sequence file

---
 .../gatk/tools/walkers/phasing/PhasingUtilitiesUnitTest.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilitiesUnitTest.java b/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilitiesUnitTest.java
index c06664edc..e939373f4 100644
--- a/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilitiesUnitTest.java
+++ b/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilitiesUnitTest.java
@@ -75,7 +75,7 @@ public class PhasingUtilitiesUnitTest extends BaseTest  {
 
     @BeforeClass
     public void init() throws FileNotFoundException {
-        referenceFile = new CachingIndexedFastaSequenceFile(new File("/Users/ronlevine/exampleFASTA/exampleFASTA.fasta"));
+        referenceFile = new CachingIndexedFastaSequenceFile(new File(b37KGReference));
         ref = Allele.create("C", true);
         alt = Allele.create("T", true);
     }