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Cleaning up integration test

This commit is contained in:
Eric Banks 2012-07-17 16:06:04 -04:00
parent 8dbc9cb29c
commit 33be41ecf5
2 changed files with 2 additions and 3 deletions
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3
protected/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRIntegrationTest.java
View File

@ -107,8 +107,7 @@ public class BQSRIntegrationTest extends WalkerTest {
{new PRTest("", "d2d6ed8667cdba7e56f5db97d6262676")},
{new PRTest(" -qq -1", "b7053d3d67aba6d8892f0a60f0ded338")},
{new PRTest(" -qq 6", "bfbf0855185b2b70aa35237fb71e4487")},
{new PRTest(" -DIQ", "66aa65223f192ee39c1773aa187fd493")},
{new PRTest(" -EOQ", "")}
{new PRTest(" -DIQ", "66aa65223f192ee39c1773aa187fd493")}
};
}

2
public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/BaseQualityScoreRecalibrator.java
View File

@ -185,7 +185,7 @@ public class BaseQualityScoreRecalibrator extends LocusWalker<Long, Long> implem
Class c = null;
for ( Class<? extends RecalibrationEngine> REclass : REclasses ) {
if ( REclass.isAssignableFrom(ProtectedPackageSource.class) ) {
if ( ProtectedPackageSource.class.isAssignableFrom(REclass) ) {
c = REclass;
break;
}