From 33760834d6f846320c2662e3de57525d9ffeea45 Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sat, 6 Feb 2010 16:22:26 +0000
Subject: [PATCH] commented out inactive (due to string ==) but actually
 incorrect code.  Sometimes two wrongs do make a right

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2801 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
index 3f87d596d..3b98a9d15 100644
--- a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
+++ b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
@@ -243,8 +243,8 @@ public class rodDbSNP extends BasicReferenceOrderedDatum implements VariationRod
             RS_ID = parts[4];
             strand = parts[6];
             refBases = parts[7];
-            if (strand == "-")
-                refBases = BaseUtils.simpleReverseComplement(refBases);
+            //if (strand.equals("-")) // this is just wrong lol
+            //    refBases = BaseUtils.simpleReverseComplement(refBases);
             observed = parts[9];
             molType = parts[10];
             varType = parts[11];