diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java index 3f87d596d..3b98a9d15 100644 --- a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java @@ -243,8 +243,8 @@ public class rodDbSNP extends BasicReferenceOrderedDatum implements VariationRod RS_ID = parts[4]; strand = parts[6]; refBases = parts[7]; - if (strand == "-") - refBases = BaseUtils.simpleReverseComplement(refBases); + //if (strand.equals("-")) // this is just wrong lol + // refBases = BaseUtils.simpleReverseComplement(refBases); observed = parts[9]; molType = parts[10]; varType = parts[11];