zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Updating the MD5s 

Clipping adaptor boundaries changed the results of CountCovariates which affected the PPP output.
a few more loci were visible to locus walkers.
This commit is contained in:
Mauricio Carneiro 2011-12-21 15:14:05 -05:00
parent a333144aaf
commit 3358c132a8
2 changed files with 4 additions and 4 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
public/scala/test/org/broadinstitute/sting/queue/pipeline/PacbioProcessingPipelineTest.scala
View File

@ -29,7 +29,7 @@ import org.broadinstitute.sting.BaseTest
class PacbioProcessingPipelineTest { class PacbioProcessingPipelineTest {
@Test @Test
def testBAM { def testPacbioProcessingPipeline {
val testOut = "exampleBAM.recal.bam" val testOut = "exampleBAM.recal.bam"
val spec = new PipelineTestSpec val spec = new PipelineTestSpec
spec.name = "pacbioProcessingPipeline" spec.name = "pacbioProcessingPipeline"
@ -40,7 +40,7 @@ class PacbioProcessingPipelineTest {
" -blasr ", " -blasr ",
" -test ", " -test ",
" -D " + BaseTest.testDir + "exampleDBSNP.vcf").mkString " -D " + BaseTest.testDir + "exampleDBSNP.vcf").mkString
spec.fileMD5s += testOut -> "f0adce660b55cb91d5f987f9a145471e" spec.fileMD5s += testOut -> "cf147e7f56806598371f8d5d6794b852"
PipelineTest.executeTest(spec) PipelineTest.executeTest(spec)
} }
} }

4
public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
View File

@ -39,7 +39,7 @@ class ExampleCountLociPipelineTest {
" -R " + BaseTest.testDir + "exampleFASTA.fasta", " -R " + BaseTest.testDir + "exampleFASTA.fasta",
" -I " + BaseTest.testDir + "exampleBAM.bam", " -I " + BaseTest.testDir + "exampleBAM.bam",
" -o " + testOut).mkString " -o " + testOut).mkString
spec.fileMD5s += testOut -> "67823e4722495eb10a5e4c42c267b3a6" spec.fileMD5s += testOut -> "ade93df31a6150321c1067e749cae9be"
PipelineTest.executeTest(spec) PipelineTest.executeTest(spec)
} }
} }