From 3358c132a84105fa1749746ffed8d180f0a0929a Mon Sep 17 00:00:00 2001
From: Mauricio Carneiro <carneiro@broadinstitute.org>
Date: Wed, 21 Dec 2011 15:14:05 -0500
Subject: [PATCH] Updating the MD5s

Clipping adaptor boundaries changed the results of CountCovariates which affected the PPP output.
a few more loci were visible to locus walkers.
---
 .../sting/queue/pipeline/PacbioProcessingPipelineTest.scala   | 4 ++--
 .../pipeline/examples/ExampleCountLociPipelineTest.scala      | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/PacbioProcessingPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/PacbioProcessingPipelineTest.scala
index 50aa66367..1278b6e16 100644
--- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/PacbioProcessingPipelineTest.scala
+++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/PacbioProcessingPipelineTest.scala
@@ -29,7 +29,7 @@ import org.broadinstitute.sting.BaseTest
 
 class PacbioProcessingPipelineTest {
   @Test
-  def testBAM {
+  def testPacbioProcessingPipeline {
     val testOut = "exampleBAM.recal.bam"
     val spec = new PipelineTestSpec
     spec.name = "pacbioProcessingPipeline"
@@ -40,7 +40,7 @@ class PacbioProcessingPipelineTest {
       " -blasr ",
       " -test ",
       " -D " + BaseTest.testDir + "exampleDBSNP.vcf").mkString
-    spec.fileMD5s += testOut -> "f0adce660b55cb91d5f987f9a145471e"
+    spec.fileMD5s += testOut -> "cf147e7f56806598371f8d5d6794b852"
     PipelineTest.executeTest(spec)
   }
 }
diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
index f657e4be1..e737e52ea 100644
--- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
+++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
@@ -39,7 +39,7 @@ class ExampleCountLociPipelineTest {
       " -R " + BaseTest.testDir + "exampleFASTA.fasta",
       " -I " + BaseTest.testDir + "exampleBAM.bam",
       " -o " + testOut).mkString
-    spec.fileMD5s += testOut -> "67823e4722495eb10a5e4c42c267b3a6"
+    spec.fileMD5s += testOut -> "ade93df31a6150321c1067e749cae9be"
     PipelineTest.executeTest(spec)
   }
-}
+}
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